MmuEX6032858 @ mm9
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41848556-41855839:-
Coord C1 exon
chr19:41855648-41855839
Coord A exon
chr19:41853600-41853698
Coord C2 exon
chr19:41848556-41848666
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTGTATTTTTTGTAGTTC
3' ss Score
6.01
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG
Seq A exon
TTCCATAAGCAGTCTCTGACTCAAACACCAGGGAGAGAACCTTCTACTCCCAGGGTCCAGAAGAGAGCCCGCTCACGCTCCTTCAGTGGGCTTATCAAG
Seq C2 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.879 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCGCTGAGAGAACTCTT
R:
CTGGCTTTCTTCAGTTCCCCC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: