DreEX6099803 @ danRer10
Exon Skipping
Gene
ENSDARG00000083189 | arhgap19
Description
Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
Coordinates
chr22:34986123-34988353:-
Coord C1 exon
chr22:34988177-34988353
Coord A exon
chr22:34986789-34986887
Coord C2 exon
chr22:34986123-34986248
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTTCCTGATTCCAGCTT
3' ss Score
6.82
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATGATCTGGAGCTGTTGTCGGTCAGCGGCTCTCCGTTCATCAGCGCGTGTAAGAGGAGCGGAGAGAGAGTCCGCTTAGACTCAGATAATCACACAGAAGAGGCGCTGAAAGAGCTTTACAGGCACGTCACTGACAACATGCCCAACTCCGCCAAGAAGAAGAAGCTCATCAGACAG
Seq A exon
CTTGGCAAGCCGTCCACCCCTGGGACGCCTGTCAATGAGAACCTGACGCCTAGCAGTAAGAAGCACGGCCGCTCTCGCTCCTTCGGTGGTCTCATCAAG
Seq C2 exon
AGGAAGGTTTTGGGAGGTCAGCCGGCAGACAGGAGAGGGCGACACGTGTCTCCTCAGAGCGCTGCAGGTTTGGGGAAAGAAAACATCAGCTCTGAAATGGCCAACTGAACTCCACACTGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000083189-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTACAGGCACGTCACTG
R:
GTGTGGAGTTCAGTTGGCCAT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]