HsaEX6089791 @ hg19
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:23724]
Coordinates
chr10:98989521-99003916:-
Coord C1 exon
chr10:99003725-99003916
Coord A exon
chr10:98994974-98995072
Coord C2 exon
chr10:98989521-98989631
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCCATGTTTTCTTTTAGTTT
3' ss Score
9.4
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GATGACCTTGACCTCATAGCTTCATGTCATACTAAGTCCTTTCAGCTGGCAAAGTCTCAGAAACGGAACCGGGTAGATTCCTGCCCTCACCAGGAGGAGACCCAGCACCATACGGAAGAGGCACTGAGAGAGCTGTTTCAACACGTTCATGATATGCCAGAGTCAGCAAAGAAGAAACAACTTATTAGACAG
Seq A exon
TTTAATAAGCAATCATTGACCCAGACACCAGGGCGAGAACCTTCTACTTCCCAGGTACAAAAGAGGGCTCGTTCGCGCTCCTTCAGTGGGCTTATTAAG
Seq C2 exon
CGGAAGGTCCTGGGAAATCAGATGATGTCAGAAAAGAAAAAGAAGAACCCTACTCCAGAATCTGTGGCCATTGGTGAATTGAAGGGAACCAGCAAAGAAAATAGGAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.970 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACGGAAGAGGCACTGA
R:
GCTGGTTCCCTTCAATTCACCA
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)