BtaEX0001366 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18354072-18358986:-
Coord C1 exon
chr26:18358795-18358986
Coord A exon
chr26:18356214-18356312
Coord C2 exon
chr26:18354072-18354182
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATGTTTGCTTCTAGTTT
3' ss Score
7.59
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATGATCTTGATCTGATAGCTTCATGTCAAACCAGGTCCTTCCAACTGGCAAAATCTCAAAAATGGAACCGGGTTGATTCCTGCTCTCATCAGGAGGAGACCCAGCAGCGTACGGAAGAGGCACTAAGAGAATTGTTCCAACACGTTCATAATATGCCAGAGTCGGCGAAGAAGAAACAGCTCATCAGACAG
Seq A exon
TTTAATAAGCATTCTGGGACCCAGACACCGGGACGTGAGCCTTCTACTCCCCCGGTGCGGAAAAGGGCTCGCTCACGGTCCTTCAGTGGCCTCATTAAG
Seq C2 exon
CGGAAGGTCCTGGGAAATCAGATGATGTCAGAAAAGAAAAACAAGTACCCTACTCCGGATTCGGTAGCCATTGGTGAATTGAAGAGAGCCAGCAAAGAAAATATGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.909 C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCCTTCCAACTGGCAAA
R:
CTGATTTCCCAGGACCTTCCG
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development