MmuEX6032858 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41774066-41781349:-
Coord C1 exon
chr19:41781158-41781349
Coord A exon
chr19:41779110-41779208
Coord C2 exon
chr19:41774066-41774176
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTGTATTTTTTGTAGTTC
3' ss Score
6.01
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG
Seq A exon
TTCCATAAGCAGTCTCTGACTCAAACACCAGGGAGAGAACCTTCTACTCCCAGGGTCCAGAAGAGAGCCCGCTCACGCTCCTTCAGTGGGCTTATCAAG
Seq C2 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154-'19-17,'19-14,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.874 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCGCTGAGAGAACTCTT
R:
CTGGCTTTCTTCAGTTCCCCC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types