GgaEX6040723 @ galGal4
Exon Skipping
Gene
ENSGALG00000007609 | ARHGAP19
Description
rho GTPase-activating protein 19 [Source:RefSeq peptide;Acc:NP_001012927]
Coordinates
chr6:21921402-21923071:+
Coord C1 exon
chr6:21921402-21921590
Coord A exon
chr6:21922280-21922378
Coord C2 exon
chr6:21922979-21923071
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTGTTTCCTCCAAGTTC
3' ss Score
7.34
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATGACCTGGATTTGCTAACATCTCCTGGTTCCAAGGAACTGCAACCCCTCAAGTCCCAGAAGCGAAGCCGTTTGGACTCCTGCCATCAGGAGGAGACCCAGCAGCGCACAGAGGAGGCACTGAGGGAGCTCTTTCGCCACGTACACAATATGCCTGACTCTGCAAAGAAGAAGAAGCTCATCCGTCAG
Seq A exon
TTCAATAAGCATCCTTCAGCTCTCACTCCCAGCTCTGATGTGGCCACACCCCCAGCACCACGACGCGCTCGCTCCCGCTCCTTCAGCGGCCTCATTAAG
Seq C2 exon
AGGAAGGTTTTGGGAACCCCGGTTATACAGGAGAGGAAGAGCAGAGATACCACACCGGAGCCCAAACGAGTCAGCAAAGAGAATGTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007609-'14-19,'14-14,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.939 C2=0.903
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGTCCCAGAAGCGAAG
R:
TCCTGTATAACCGGGGTTCCC
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]