RnoEX6007328 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261022266-261026311:-
Coord C1 exon
chr1:261026120-261026311
Coord A exon
chr1:261024242-261024340
Coord C2 exon
chr1:261022266-261022376
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTATTCTTTTGTAGTTC
3' ss Score
9.14
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GATGATCTTGATCTGACAACCTCATGCCATGCCATGTCCTTCCAACGGGCAAGACCTCAGAAACAGAACAGGGTAGATTCCTATTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAACATGTTCATAACTTGCCTGACTCGGCGAAGAAGAAACAACTTATCAGACAG
Seq A exon
TTCCATAAGCAGTCTTTGACTCAAACACCAGGGAGAGAACCTTCTACCCCCAGGGTCCAGAAGAGAGCCCGCTCACGCTCCTTCAGTGGGCTTATCAAG
Seq C2 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCTGTGGCCATGGAGGAACTGAAGAAAGCCAGCAAAGAGAATATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'17-13,'17-12,21-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.939 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGCAAGACCTCAGAAAC
R:
TCATCTGACTGCCCAGGACTT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]