MmuEX6034146 @ mm10
Exon Skipping
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3636356-3637254:+
Coord C1 exon
chr8:3636356-3636421
Coord A exon
chr8:3636542-3636574
Coord C2 exon
chr8:3637116-3637254
Length
33 bp
Sequences
Splice sites
3' ss Seq
ACTGCATGAAGCATTTCAAGGGC
3' ss Score
-3.33
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCAACATCAAAGACCTGTCCCACATCCTGAAAAAGATGCCACAGTATCAGAAGGAGCTGAACAAG
Seq A exon
GGCTCGGTGGAGAAGCTGTGCAGTGTGGAGCAG
Seq C2 exon
GACCTGGCCATGGGCTCTGATGCAGAGGGTGAGAAGATCAAGGACGCCATGAAGCTGATTGTCCCGGTGCTGCTGGATGCCTCGGTGCCACCCTACGACAAGATCCGGGTTCTGTTGCTCTACATCCTTCTGCGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-'30-22,'30-21,31-22
Average complexity
S*
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.0=100),PF140711=YlbD_coat=FE(19.5=100)
A:
PF0099518=Sec1=FE(4.9=100),PF140711=YlbD_coat=FE(23.9=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.8=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGTCCCACATCCTGAA
R:
CAGCTTCATGGCGTCCTTGAT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types