HsaEX0062737 @ hg38
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7629796-7644752:+
Coord C1 exon
chr19:7629796-7643048
Coord A exon
chr19:7643165-7643245
Coord C2 exon
chr19:7644614-7644752
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCTGCACCCTGCAGTAT
3' ss Score
5.23
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGGGACCGGATCCCCCCCCCACCGCCCACTGTGGGCCTGGTAGCGGCCTTGGGATCCCTGGCTGCTGCCAAGTCTTTGGCCCTCATGAGCACCCCTCGTGTGACTCCAGACTGGCCTCCAATTTCACCCCACCTCTCCCTGTCCCCCCTGAGTGGGCTCACCCATGGCCTGTGGCTCCTCTCCCCTCACTCTCACCCCCGCCCACCCTCATGGCCAGGAAGGTCACGGAGCTCCTGAGGACCTTCTGTGAGAGCAAGAGGCTGACCACGGACAAGGTAGGGGCGGACCCAGGTCACCAAAGGCGCTGGTGGAAGGAAGCCCCCCTCCCCATGGGCGCAGGGCCACAGCCTGGATTTCGAGCCTGGACTGAGACCCAGGTGGGCACTGCCTGGCTTCGCCCCCCAATCCCTACCCTCTTCCCCCTACTTCCCCAGGCGAACATCAAAGACCTATCCCAGATCCTGAAAAAGATGCCGCAGTACCAGAAGGAGCTGAATAAG
Seq A exon
TATTCTACGCACCTGCATCTAGCAGATGATTGTATGAAGCACTTCAAGGGCTCGGTGGAGAAGCTGTGTAGTGTGGAGCAG
Seq C2 exon
GACCTGGCCATGGGCTCCGACGCAGAGGGGGAGAAGATCAAGGACTCCATGAAGCTGATCGTTCCGGTGCTGCTGGACGCGGCGGTGCCCGCCTACGACAAGATCCGGGTCCTGCTGCTCTACATCCTCCTTCGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-'23-39,'23-32,25-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(18.6=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(23.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(0.9=2.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCGAACATCAAAGACCT
R:
AGGACCCGGATCTTGTCGTAG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development