BtaEX6038387 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17711683-17713092:+
Coord C1 exon
chr7:17711683-17711748
Coord A exon
chr7:17711853-17711933
Coord C2 exon
chr7:17712954-17713092
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTCCCACACCTACCCTGCAGTAC
3' ss Score
6.3
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCAACATCAAAGACCTGTCTCATATCCTGAAAAAGATGCCACAGTACCAGAAGGAGCTGAACAAG
Seq A exon
TACTCTACACACCTGCATTTAGCTGATGACTGCATGAAGCATTTCAAGGGCTGCGTGGAGAAGCTGTGCAGCGTGGAGCAG
Seq C2 exon
GACTTAGCCATGGGCTCAGACGCAGAGGGTGAGAAGATCAAGGACCCCATGAAGCTGATTGTACCGGTGCTACTGGACGCTGCAGTGCCAGCCTACGACAAGATCCGGGTTCTGTTGCTCTACATCCTGCTACGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(18.9=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(23.4=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(0.9=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCCACAGTACCAGAAGGA
R:
TCCGTAGCAGGATGTAGAGCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]