MmuEX6034146 @ mm9
Exon Skipping
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3636356-3637254:+
Coord C1 exon
chr8:3636356-3636421
Coord A exon
chr8:3636494-3636574
Coord C2 exon
chr8:3637116-3637254
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCCAGTTCCCACCCTGCAGTAC
3' ss Score
4.6
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCAACATCAAAGACCTGTCCCACATCCTGAAAAAGATGCCACAGTATCAGAAGGAGCTGAACAAG
Seq A exon
TACTCTACGCACCTGCATTTGGCAGATGACTGCATGAAGCATTTCAAGGGCTCGGTGGAGAAGCTGTGCAGTGTGGAGCAG
Seq C2 exon
GACCTGGCCATGGGCTCTGATGCAGAGGGTGAGAAGATCAAGGACGCCATGAAGCTGATTGTCCCGGTGCTGCTGGATGCCTCGGTGCCACCCTACGACAAGATCCGGGTTCTGTTGCTCTACATCCTTCTGCGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-'20-19,'20-16,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.0=100),PF140711=YlbD_coat=FE(19.5=100)
A:
PF0099518=Sec1=FE(4.9=100),PF140711=YlbD_coat=FE(23.9=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.8=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGTCCCACATCCTGAA
R:
TGTAGAGCAACAGAACCCGGA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: