RnoEX0087371 @ rn6
Exon Skipping
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2185251-2186086:+
Coord C1 exon
chr12:2185251-2185316
Coord A exon
chr12:2185397-2185477
Coord C2 exon
chr12:2185948-2186086
Length
81 bp
Sequences
Splice sites
3' ss Seq
AACCCAGTCCCGCCCTGCAGTAC
3' ss Score
4.45
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCCAACATCAAAGACCTGTCCCACATCCTGAAAAAGATGCCACAGTATCAGAAGGAGTTGAACAAG
Seq A exon
TACTCCACGCACCTGCACTTGGCAGATGACTGCATGAAGCACTTCAAGGGCTCGGTGGAGAAGCTGTGCGGTGTGGAGCAG
Seq C2 exon
GACCTGGCCATGGGCTCTGATGCAGAGGGTGAGAAGATCAAGGACACCATGAAACTGATTGTCCCGGTGCTGTTGGATGCCTCCGTGCCACCCTATGACAAGATCCGGGTTCTGCTGCTCTACATCCTTCTGCGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(18.6=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(23.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGTCCCACATCCTGAA
R:
CAGCAGAACCCGGATCTTGTC
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]