DreEX6019012 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:53006547-53009846:+
Coord C1 exon
chr3:53006547-53006612
Coord A exon
chr3:53006872-53006952
Coord C2 exon
chr3:53009705-53009846
Length
81 bp
Sequences
Splice sites
3' ss Seq
AACATTTGTGCTTTCTACAGTAC
3' ss Score
6.82
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCCAACATCAAAGATCTGTCTCAGATGCTGAAGAAGATGCCGCAGTACCAGAAAGAGCTGAGCCTG
Seq A exon
TACTCCACTCATCTGAACCTGGCTGATGCTTGCATGAAGAAGTTCAAGAACACGTTAGACAAGCTGTGTGAGGTGGAGCAG
Seq C2 exon
GATTTGGCCATGGGATCAGATGCCCAGGGCGAACCGCTTAAAGATGCTATGAAGAGTATCGTCCCTGTTCTTCTCAACACAGAGATCAAAGACTATGATAAAATCCGCATCATACTGCTGTACATCTTCCACAAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCTGAAGAAGATGCCGC
R:
TCTTGTGGAAGATGTACAGCAGT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]