MmuEX6035220 @ mm10
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28675275-28694742:-
Coord C1 exon
chr8:28694515-28694742
Coord A exon
chr8:28683163-28683252
Coord C2 exon
chr8:28675275-28675439
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTCCTCCTACAGGAA
3' ss Score
12.46
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GAAGTGATGTCAGTGGAGGATGAGTCCACATCCTGTTACTGCCTCTTGGATCCCTTTGCCTGTCACGTGCTGCTTGATAGCTTTGGAACGTATGCCCTCACAGGAGAGCCAATCACAGACTGTGCCGTAAAGCAGCTCAAGGTGGCTGTGTTTGGCTGCATGTCCTGTAACTCCTTGGATTACAACCTGAGAGTTTACTGTGTGGACAATACTCCTTGTGCATTTCAG
Seq A exon
GAAGTGATTTCTGACGAACGGCACCAAGGCGGCCAGCTCCTGGAAGAACCAAAGCTGCTGCATTTCAAAGGGAATACATTCAGTCTCCAG
Seq C2 exon
GAAGTCCCCTTCTCCCGAGTGTGGAGCAGCAACCGGCAGCCCCTGCACTGTGCCTTCTCCCTGGAGCGCTACACGCCCACCACCACCCAGCTGTCCTGCAAAATCTGCATTCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCCATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-'20-18,'20-17,21-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCATGTCCTGTAACTCC
R:
AGATTTTGCAGGACAGCTGGG
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types