HsaEX6080288 @ hg38
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr8:35750582-35767066:+
Coord C1 exon
chr8:35750582-35750809
Coord A exon
chr8:35759320-35759469
Coord C2 exon
chr8:35766902-35767066
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTCTCCTATAGGAA
3' ss Score
12.43
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAGTGATGTCAGTGGAAGATGAATCTACATCCTGTTACTGCCTTTTGGACCCCTTTGCGTGTCATGTGCTCCTGGACAGCTTTGGGACCTATGCGCTCACTGGAGAGCCAATCACAGACTGTGCCGTGAAGCAACTGAAGGTGGCGGTTTTTGGCTGCATGTCCTGTAACTCCCTGGATTACAACTTGAGAGTTTACTGTGTGGACAATACCCCTTGTGCATTTCAG
Seq A exon
GAAGTGGTTTCAGATGAAAGGCATCAAGGTGGACAGCTCCTGGAAGAACCAAAATTGCTGCATTTCAAAGGGAATACCTTTAGTCTTCAGATTTCTGTCCTTGATATTCCCCCATTCCTCTGGAGAATTAAACCATTCACTGCCTGCCAG
Seq C2 exon
GAAGTCCCGTTCTCCCGCGTGTGGTGCAGTAACCGGCAGCCCCTGCACTGTGCCTTCTCCCTGGAGCGTTATACGCCCACTACCACCCAGCTGTCCTGCAAAATCTGCATTCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCAATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-'44-45,'44-42,46-45
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000416672fB29399
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTTTGGGACCTATGC
R:
CTGGGTGGTAGTGGGCGTATA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains