GgaEX6024642 @ galGal4
Exon Skipping
Gene
ENSGALG00000001608 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr22:1894736-1898051:+
Coord C1 exon
chr22:1894736-1894963
Coord A exon
chr22:1896254-1896403
Coord C2 exon
chr22:1897887-1898051
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTGCCATTGCAGGAA
3' ss Score
10.64
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAAGTGATGTCTGTGGAAGAGGAAACTACTTCCTGCTACTGCCTGCTGGATCCTTATGCCTGTCACATTCTCTTAAACAGCTTTGGAACTTATGCACTTATTGGAGAACCCATCTCTGAGTGTGCCGTCCGACAGCTGAAAGTAGCGGTTTTTGGCTGCCTATCTTGCAATTCTCTGGATTACAATCTGAGAGTGTATTGCATGGATAACACACCTTGTGCATTTCAG
Seq A exon
GAAGTGGTTTTGGATGAAAGGCTCCAAGGAGGACAATTACTGGATGAACCAAAACTTCTGCATTTCAAAGGGAACACCTTCAGTCTCCAGATATCTGTCCTCGATATCCCTCCTTTCCTTTGGAGAATCAAACCATTCACTGCCTGTCAG
Seq C2 exon
GAGGTCCCATTCTCCCGTGTGTGGTGCAGTAACCAGAAGCCGCTGCACTGTGCCTTCTCCCTGGAGCGTTACACCCCTGCAACCACACAGCTGTCCTGCAAGATCTGCGTCCGGCAAGTCAAGGGGCACGAGCAGATCCTACAGATCCAGACATCCATCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCCTGCTACTGCCTGCT
R:
GCTTCTGGTTACTGCACCACA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]