RnoEX0096642 @ rn6
Exon Skipping
Gene
ENSRNOG00000011858 | Unc5d
Description
unc-5 netrin receptor D [Source:RGD Symbol;Acc:1309245]
Coordinates
chr16:67551998-67572490:+
Coord C1 exon
chr16:67551998-67552225
Coord A exon
chr16:67564851-67565000
Coord C2 exon
chr16:67572326-67572490
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCTGCTCCTACAGGAA
3' ss Score
11.14
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAGTAATGTCAGTGGAGGATGAGTCCACATCCTGTTACTGCCTCTTGGATCCCTTCGCCTGTCATGTGCTGCTTGATAGCTTTGGAACGTATGCCCTCACGGGAGAGCCCATCACAGACTGTGCGGTAAAGCAGCTCAAGGTGGCTGTGTTTGGCTGCATGTCCTGTAACTCCTTGGATTACAACCTGAGAGTTTATTGTGTGGACAACACTCCTTGTGCATTTCAG
Seq A exon
GAAGTGGTTTCTGATGAACGGCACCAAGGCGGCCAGCTCCTGGAGGAGCCAAAGCTGCTTCATTTCAAAGGGAATACATTCAGTCTTCAGATCTCTGTCCTTGACATCCCTCCATTCCTCTGGAGGATCAAACCATTCACTGCATGCCAG
Seq C2 exon
GAAGTCCCCTTCTCCAGAGTGTGGAGCAGCAACCGGCAGCCCCTGCATTGTGCCTTCTCCCTGGAGCGCTACACGCCCACCACCACCCAGCTGTCCTGCAAAATCTGCATTCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCCATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011858-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAACGTATGCCCTCA
R:
AGATTTTGCAGGACAGCTGGG
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]