DreEX6011009 @ danRer10
Exon Skipping
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26781203-26788616:+
Coord C1 exon
chr5:26781203-26781430
Coord A exon
chr5:26785262-26785411
Coord C2 exon
chr5:26788452-26788616
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTGTTTGTCCACAGGGA
3' ss Score
13.12
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAATAATGTCAGTAGATGATGAATCAACCTCCTGCTATTGCCTGATGGACTCACATAGCTGTCACTTGTTGCTGGATCAGCCGGGCTGTTATGCGCTGGTGGGGGAGCCAATCACCGATGCCGCCATAAAGAGACTAAGGATTGCTGTGTTTGGCAGTATGGAGGCTTCCTCTTTGGACTACAGCCTGCGAGTGCACTGTGTAGACGATACGCCACATGCCTTTCAG
Seq A exon
GGAGTGGTCACAGCTGAAACCTGCAGAGGAGGTCAGCTTTTAGAAGAGCCCAAGACACTGTTCTTCAAAGGAAACTGCCTCAGTCTGCAGGTGTCCATCCAGGATATCCCTCAGTTTCTGTGGAGCATCAAACCCTTCACCACCTGTCAG
Seq C2 exon
GAATTCTCCTTCACCCAAGTGTGGTATAGTAACCAGCAGCCTGTGCACTGTGCCTTCTCACTGCAGAGACATAGCGCCGCCACCAACCAGCTCTCCTGCAAGATCAGTGTGCGGCAGGTCAAAGGTCACGAGCAGATCCTGCAGGTCTACACCTCAGTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCGATGCCGCCATAAAG
R:
CTGCTCGTGACCTTTGACCTG
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]