BtaEX0039148 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:31032840-31050271:+
Coord C1 exon
chr27:31032840-31033067
Coord A exon
chr27:31042286-31042435
Coord C2 exon
chr27:31050107-31050271
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTGTCCTATAGGAA
3' ss Score
11.65
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAGTGATGTCGGTGGAGGATGAATCCACATCCTGCTACTGCCTGTTGGACCCTTTTGCATGTCACGTGCTCCTAGACAGCTTTGGGACTTATGCCCTCACCGGGGAACCCATCACAGACTGTGCCGTGAAGCAGCTCAAGGTGGCAGTTTTTGGCTGCATGTCCTGTAACTCTCTGGACTACAACTTGAGGGTCTACTGTGTGGACAACACCCCTTGGGCATTTCAG
Seq A exon
GAAGTGGTTTCGGATGAAAGGCATCAAGGTGGACAACTCCTGGAAGAACCAAAGTTGCTGCATTTCAAAGGGAATACTTTCAGTCTTCAGATCTCTGTCCTTGATATCCCCCCATTCCTCTGGAGAATTAAACCATTCACTGCATGCCAG
Seq C2 exon
GAAGTCCCGTTCTCCCGCGTGTGGTGCAGTAACCGGCAGCCCCTGCACTGTGCCTTCTCCCTGGAGCGCTACACGCCCACCACCACCCAGCTGTCCTGCAAAATCTGCATCCGGCAGCTCAAAGGCCATGAACAGATCCTTCAAGTGCAGACGTCAATCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241-'18-31,'18-30,19-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTTGGGACTTATGCCC
R:
AGATTTTGCAGGACAGCTGGG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development