MmuEX6035220 @ mm9
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 homolog D (C. elegans) [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:29785747-29805214:-
Coord C1 exon
chr8:29804987-29805214
Coord A exon
chr8:29793575-29793724
Coord C2 exon
chr8:29785747-29785911
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTCCTCCTACAGGAA
3' ss Score
12.46
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GAAGTGATGTCAGTGGAGGATGAGTCCACATCCTGTTACTGCCTCTTGGATCCCTTTGCCTGTCACGTGCTGCTTGATAGCTTTGGAACGTATGCCCTCACAGGAGAGCCAATCACAGACTGTGCCGTAAAGCAGCTCAAGGTGGCTGTGTTTGGCTGCATGTCCTGTAACTCCTTGGATTACAACCTGAGAGTTTACTGTGTGGACAATACTCCTTGTGCATTTCAG
Seq A exon
GAAGTGATTTCTGACGAACGGCACCAAGGCGGCCAGCTCCTGGAAGAACCAAAGCTGCTGCATTTCAAAGGGAATACATTCAGTCTCCAGGTCTCTGTCCTTGACATCCCTCCCTTCCTCTGGAGGATCAAACCGTTCACTGCATGCCAG
Seq C2 exon
GAAGTCCCCTTCTCCCGAGTGTGGAGCAGCAACCGGCAGCCCCTGCACTGTGCCTTCTCCCTGGAGCGCTACACGCCCACCACCACCCAGCTGTCCTGCAAAATCTGCATTCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCCATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAACGTATGCCCTCA
R:
AGATTTTGCAGGACAGCTGGG
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: