MmuEX6039321 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124589033-124594762:+
Coord C1 exon
chr8:124589033-124589102
Coord A exon
chr8:124591680-124591798
Coord C2 exon
chr8:124594629-124594762
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATGTGACCTTCGCTCTGCAGGAG
3' ss Score
9.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAATTGTGGAAAAACCAGAATTCATTCTTGGAGGGGCCACCAGGACCGACATTTGCCAAGGGGAGCTGG
Seq A exon
GAGACTGCTGGCTCCTGGCGGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGACCAGGGTGGTTCCCCAGGACCAAGGATTTGGTTCTGGCTATGCCGGGATATTTCATTTCCAG
Seq C2 exon
TTCTGGCAGCACAGTGAGTGGCTGGACGTAGTGATTGATGACCGCCTGCCCACCTTCAAGGACCGCCTGGTCTTCCTCCACTCTGCTGATCACAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.8=100)
A:
PF0064816=Peptidase_C2=FE(13.2=100)
C2:
PF0064816=Peptidase_C2=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCAGAATTCATTCTTGGAGGG
R:
TTGGCATAGGCTTTCTCCAGC
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types