RnoEX6061190 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57349417-57354014:+
Coord C1 exon
chr19:57349417-57349486
Coord A exon
chr19:57351547-57351665
Coord C2 exon
chr19:57353881-57354014
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACGTGACCTTCTCTCTGCAGGAG
3' ss Score
10.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAATTGTGGAAAACCCAGAATTCATTCTGGGAGGGGCCACCAGGACCGACATCTGCCAAGGGGAACTGG
Seq A exon
GAGACTGCTGGCTCCTGGCCGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGGCCAGAGTGGTACCCCAGGACCAAGGATTTGGTTCTGGCTATGCTGGGATATTTCACTTCCAG
Seq C2 exon
TTCTGGCAGCACAGTGAGTGGCTGGACGTGGTGATTGATGACCGCCTGCCTACCTTTCGGGATCGCCTGGTCTTCCTCCACTCTGCCGACCACAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.8=100)
A:
PF0064816=Peptidase_C2=FE(13.2=100)
C2:
PF0064816=Peptidase_C2=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCATTCTGGGAGGGGCC
R:
TTGGCATAGGCTTTCTCCAGC
Band lengths:
186-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]