GgaEX6030257 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39820944-39822141:+
Coord C1 exon
chr3:39820944-39821013
Coord A exon
chr3:39821436-39821554
Coord C2 exon
chr3:39822008-39822141
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTCTCAATTCACAGGTG
3' ss Score
11.4
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACATTGTCAAAGATCCCAAGTTTATCCTCGAAGGAGCCACAAGAACTGACATTTGCCAAGGGGATCTTG
Seq A exon
GTGACTGCTGGCTATTAGCCGCCATAGCTTCTCTCACACTGAATGAGAAAACACTAGCAAGAGTAGTACCGCTGGATCAAAATTTTGGGCCAGGTTATGCTGGGATATTTCACTTCCAG
Seq C2 exon
TTCTGGCAGCACAATGAGTGGCTGGATGTTGTGATTGATGATCGATTGCCCACCTTCAAAGACCGGTTGGTATTCGTACATTCAGCAGAACACAATGAATTTTGGAGTGCTTTACTAGAGAAAGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.8=100)
A:
PF0064816=Peptidase_C2=FE(13.2=100)
C2:
PF0064816=Peptidase_C2=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGTCAAAGATCCCAAGTT
R:
GGCATAGGCTTTCTCTAGTAAAGCA
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]