MmuEX6048690 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61867831-61870247:-
Coord C1 exon
chr10:61870161-61870247
Coord A exon
chr10:61869524-61869577
Coord C2 exon
chr10:61867831-61867875
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTCTCTTCTTCCTCCCAGGGA
3' ss Score
9.5
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGAGAAAAAGGTGATGCTGGCAATGCCATCGGAGGAGGCAGGGGGGAGCCTGGCCCCCCGGGGCTCCCTGGGCCCCCTGGGCCAAAG
Seq A exon
GGAGAAGCTGGTGTTGATGGCCAGGCTGGGCCCCCAGGACAGCAAGGAGACAAG
Seq C2 exon
GGGCAGCCAGGAGCAGCTGGTGAACAGGGACCCTCTGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'32-28,'32-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.6=34.5),PF0139113=Collagen=PU(28.3=58.6)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAAAGGTGATGCTGGC
R:
CAGAGGGTCCCTGTTCACCAG
Band lengths:
124-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types