MmuEX6048690 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61330579-61332995:-
Coord C1 exon
chr10:61332909-61332995
Coord A exon
chr10:61332272-61332325
Coord C2 exon
chr10:61330579-61330623
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTCTCTTCTTCCTCCCAGGGA
3' ss Score
9.5
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGAGAAAAAGGTGATGCTGGCAATGCCATCGGAGGAGGCAGGGGGGAGCCTGGCCCCCCGGGGCTCCCTGGGCCCCCTGGGCCAAAG
Seq A exon
GGAGAAGCTGGTGTTGATGGCCAGGCTGGGCCCCCAGGACAGCAAGGAGACAAG
Seq C2 exon
GGGCAGCCAGGAGCAGCTGGTGAACAGGGACCCTCTGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.6=34.5),PF0139113=Collagen=PU(28.3=58.6)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAAAGGTGATGCTGGC
R:
CAGAGGGTCCCTGTTCACCAG
Band lengths:
124-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: