GgaEX1016350 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12129684-12130569:+
Coord C1 exon
chr6:12129684-12129770
Coord A exon
chr6:12129975-12130019
Coord C2 exon
chr6:12130525-12130569
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCATTTATTTTTCTCTCAGGGA
3' ss Score
9.04
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGAGAGAAGGGAAATGGTGAGAATGCCTTGGTGGGAGGCAAAGGGGAACCTGGTCCTCCTGGTCTGCCCGGTCCCCCTGGACCAAAG
Seq A exon
GGAGAAGCTGGTGACGTTGGTGCTGCAGGATCACGGGGGGAAAAG
Seq C2 exon
GGAGAACGTGGTGCACCGGGAGAGCAGGGACCCATGGGGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.4=27.6),PF0139113=Collagen=PU(28.8=58.6)
A:
PF0139113=Collagen=PD(16.9=66.7)
C2:
PF0139113=Collagen=PU(13.3=34.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAAGGGAAATGGTGAGA
R:
CCATGGGTCCCTGCTCTCC
Band lengths:
124-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]