MmuEX6049006 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74639088-74643003:+
Coord C1 exon
chr10:74639088-74639197
Coord A exon
chr10:74640629-74640768
Coord C2 exon
chr10:74642869-74643003
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTTTCCCCCTGCAGGAG
3' ss Score
12.84
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATTGAAGTGAAACTCTCCGTCAAGTTCACGAGCAGGGAGTTCAGCCTGAAGAGAATGCCCTCCCGCAAACAGACAGGGGTCTTCGGTGTCAAGATTGCTGTAGTCACAAA
Seq A exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTGTGGAAGAGATCGAGCGCCGGGGTATGGAGGAGGTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACATCCAGGCACTGAAGGCAGCCTTTGATGTCA
Seq C2 exon
ATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'22-25,'22-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGAAACTCTCCGTCAAGT
R:
AATGCCTTCTGCGAAGTTAGGG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: