MmuEX6049006 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75176343-75180258:+
Coord C1 exon
chr10:75176343-75176452
Coord A exon
chr10:75177884-75178023
Coord C2 exon
chr10:75180124-75180258
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTTTCCCCCTGCAGGAG
3' ss Score
12.84
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATTGAAGTGAAACTCTCCGTCAAGTTCACGAGCAGGGAGTTCAGCCTGAAGAGAATGCCCTCCCGCAAACAGACAGGGGTCTTCGGTGTCAAGATTGCTGTAGTCACAAA
Seq A exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTGTGGAAGAGATCGAGCGCCGGGGTATGGAGGAGGTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACATCCAGGCACTGAAGGCAGCCTTTGATGTCA
Seq C2 exon
ATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'47-45,'47-43,52-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGAAACTCTCCGTCAAGT
R:
AATGCCTTCTGCGAAGTTAGGG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types