RnoEX0014492 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14423629-14427906:-
Coord C1 exon
chr20:14427797-14427906
Coord A exon
chr20:14426124-14426263
Coord C2 exon
chr20:14423629-14423763
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCTTCTCCCCTGCAGGAG
3' ss Score
12.4
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATCGAAGTGAAACTCTCGGTCAAGTTCACGAGCAGGGAGTTCAGCCTGAAGAGAATGCCCTCCCGCAAACAGACGGGGGTCTTCGGTGTCAAAATCGCTGTGGTCACAAA
Seq A exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTACGCCAGTGTGTGGAGGAGATTGAGCGCCGGGGCATGGAGGAAGTAGGCATCTACCGAGTGTCCGGAGTGGCCACGGACATCCAGGCCCTGAAGGCAGCCTTTGATGTCA
Seq C2 exon
ATAACAAGGACGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCTGGCACGTTGAAGCTCTACTTCCGAGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'28-26,'28-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGTGAAACTCTCGGTCA
R:
ATGCCTTCTGCGAAGTTAGGG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]