DreEX0000808 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30577611-30581631:+
Coord C1 exon
chr8:30577611-30577720
Coord A exon
chr8:30579639-30579778
Coord C2 exon
chr8:30581497-30581631
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTTGTTCAGACG
3' ss Score
7.39
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGAGGTCAAGCTGTCTATGCGATTTACCAGCAGAGAGTTCAGTCTGAAGCGGATGCCCTCCAGAAAACAGTCTGGAGTGTTTGGAGTCAAAATCGGGGCCGTCACTAA
Seq A exon
ACGCGAACACTCCAAAGTGCCTCTGATTGTGAGACAGTGTGTGGAGGAGATCGAGCGCAGAGGGATGGAGGAAGTGGGCATCTATCGGGTCTCTGGTGTGGCCACAGACATCCAGGCCCTGAAAGCTGCATTTGATGCCA
Seq C2 exon
ACAACAAAGATGTTTCAGTTATTATGAGTGAGATGGACGTGAATGCCATTGCTGGAACACTGAAGCTTTATTTCAGAGAGCTTCCCGAGCCCCTCTTCACTGATGAACTCTACATTAACTTCACTGAAGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'23-23,'23-21,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.0=83.3)
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCAAGCTGTCTATGCG
R:
CGATGCCTTCAGTGAAGTTAATGT
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]