BtaEX6074122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73696846-73698863:-
Coord C1 exon
chr17:73698754-73698863
Coord A exon
chr17:73697440-73697579
Coord C2 exon
chr17:73696846-73696980
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCCTCCCCTGCAGGAG
3' ss Score
11.59
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATCGAAGTGAAGCTGTCAATCAAGTTCACCAGCAGGGAACTCAGCTTGAAGAGGATGCCTTCCCGAAAACAGACAGGCGTTTTCGGAGTCAGGATCGCCGTGGTCACCAA
Seq A exon
GAGGGAGCGGTCCAAGGTACCCTACATCGTGCGCCAGTGTGTCGAGGAGATCGAGCGCCGGGGCATGGAGGAGGTGGGCATCTACCGCGTGTCCGGAGTGGCCACGGACATCCAGGCCCTGAAGGCGGCCTTTGACGTCA
Seq C2 exon
ACAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCCGGGACGCTCAAGCTCTACTTCCGCGAGCTGCCCGAGCCCCTCTTCACCGACGAGTTCTACCCCAACTTCGCCGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'28-32,'28-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGTGAAGCTGTCAATCAAGT
R:
GGCGAAGTTGGGGTAGAACTC
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]