DreEX0016848 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17216768-17219219:+
Coord C1 exon
chr21:17216768-17216877
Coord A exon
chr21:17218865-17219004
Coord C2 exon
chr21:17219085-17219219
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTGTTCTCGCCTTAGACG
3' ss Score
7.29
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGAGGTGAAGATATCTATGAAGTTCACTAGTCGGGAGTTCAGCTTGAAGAGAATGCCCTCTCGGAAACCCATGGGCGTGTTTGGAGTAAATATCTCCACTGTAACAAA
Seq A exon
ACGGGAGCGCTCTAAAGTGCCCTACATCGTCAGACAGTGTCTAGAGGAAATCGAGAGAAGAGGAATGGAGGAAGTGGGTATCTACCGTGTCTCAGGAGTGGCCACAGACATCCAGGCACTCAAGACTGCCTTTGACACCA
Seq C2 exon
ATAATAAAGATGTGTCGGTAATGATGAGTGAGATGGATGTGAACGCCATCGCCGGGACGCTGAAACTGTACTTCAGAGAGCTTCCTGAGCCCCTCTTCACTGATGAGCTCTACCCTAACTTTGCAGGGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'26-25,'26-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.0=83.3)
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGAAGATATCTATGAAGTTCA
R:
CCCCCTGCAAAGTTAGGGTAG
Band lengths:
238-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]