GgaEX1010751 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8583498-8585966:-
Coord C1 exon
chr15:8585857-8585966
Coord A exon
chr15:8585009-8585148
Coord C2 exon
chr15:8583498-8583632
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTCCTTTCTTAAGGAG
3' ss Score
8.26
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCGAAGTGAAGCTGTCAGTGAAGTTTACCAGTCGAGAGTTCAGCCTGAAGAGGATGCCATCACGGAAACAGACGGGGGTCTTTGGGGTCAAGATTGCTATTGTCACCAA
Seq A exon
GAGGGAGAGATCAAAGGTGCCTTACATAGTGCGCCAGTGTGTGGAGGAGATAGAACGCCGTGGAATGGAGGAGGTGGGCATCTACCGCGTCTCTGGGGTCGCAACCGATATCCAGGCTTTGAAAGCGGCCTTTGATGTCA
Seq C2 exon
ATAACAAAGATGTGTCAGTGATGATGAGCGAGATGGATGTTAATGCTATTGCGGGCACATTGAAGCTCTACTTCCGAGAGCTGCCTGAACCTCTCTTTACAGATGAACTGTACCCCAACTTTGCAGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'41-32,'41-31,43-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.0=83.3)
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAAGTGAAGCTGTCAGTGA
R:
CCCTCTGCAAAGTTGGGGTAC
Band lengths:
240-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]