MmuEX6049698 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80007324-80007961:+
Coord C1 exon
chr10:80007324-80007451
Coord A exon
chr10:80007654-80007778
Coord C2 exon
chr10:80007863-80007961
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGACAGAATTGTCCCCCAGGTT
3' ss Score
5.4
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
Seq A exon
GTTGTGTTGCCTGCCCTCTTTGTGGGCCTGGCCCTGTTCTTCAGCCTCATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAGGTCTCGTTCTTCAG
Seq C2 exon
TGAGGATGCCCCTGGGGACCCCAACCGGATGAAGCTGCTGGAGGCTCTGCTAGGGGAGGCTGGGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'35-66,'35-55,45-66=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTTGGCACCCAAC
R:
TGGCATCTTTGTCCTGCATACT
Band lengths:
221-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types