DreEX6090526 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5686186-5688872:+
Coord C1 exon
chr11:5686186-5686334
Coord A exon
chr11:5688574-5688698
Coord C2 exon
chr11:5688780-5688872
Length
125 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCATTGTGTTTGCAGATT
3' ss Score
8.43
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
AGGCTCAGGAGACAGATCCGCTGAGCGGGGATGGTCAGAGCGACAGCGCTCCTCTCACAGGCTGCTTCCACACATGTCAGCAGCTTCGAGCACTTTTCACCAAAAGACTGAAGTACGCTTTCCGCAGTCGCAGAGGGATTTTTGCACAG
Seq A exon
ATTGTTTTGCCTGCTGTTTTTGTTCTTATTGCTCTACTGTTCAGTCTCATTGTTCCACCGTTTGGGAAATATCCATCGCTGGAGCTCCAGCCGTGGATGTATGGAGAGCAGTTTACCTTCTTCAG
Seq C2 exon
CAATGATGCCCCACAGGACCCAGCCATGCAGAACCTCCTAAAGGCCCTTCTGGATCCACCTGGGTTTGGGACCAAGTGTATGCAGCCAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCAGGAGACAGATCCG
R:
CCGTTTGGCTGCATACACTTG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]