RnoEX6021847 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69888616-69891338:-
Coord C1 exon
chr5:69891190-69891338
Coord A exon
chr5:69889790-69889914
Coord C2 exon
chr5:69888616-69888714
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCCAATGCCTGTTTATAGATT
3' ss Score
6.76
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AATCCAGGGAGACAGACCTGCTCAGCGGGATGGATGGCAAAGGCTCCTACCAGCTAAAGGGCTGGAAACTCACCCAGCAGCAGTTTGTGGCCCTCTTGTGGAAAAGGCTGCTGATTGCCCGGCGGAGTAGAAAGGGTTTCTTTGCTCAG
Seq A exon
ATTGTCCTGCCGGCTGTCTTTGTTTGCATCGCCCTGGTCTTCAGCCTGATCGTGCCACCCTTTGGCAAGTACCCCAACCTGGAACTTCAACCCTGGATGTATAACGAGCAGTATACATTTGTCAG
Seq C2 exon
TAACGATGCTCCAGAGGACATGGGCACCCAGGAACTCCTCAATGCTCTAACCAAAGATCCAGGCTTCGGGACCCGTTGTATGGAAGGAAACCCAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'39-39,'39-38,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.206
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.1=12.0)
A:
PF126982=ABC2_membrane_3=FE(7.8=100)
C2:
PF126982=ABC2_membrane_3=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGACAGACCTGCTCAG
R:
GGGATTGGGTTTCCTTCCATACA
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]