DreEX0009875 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51974903-51976115:+
Coord C1 exon
chr1:51974903-51975051
Coord A exon
chr1:51975797-51975921
Coord C2 exon
chr1:51976017-51976115
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTGTTAATTGTCCAGATT
3' ss Score
4.44
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
AGTCTCGTGAGACTGACTGGTTGGATGGTGCTGATGGTAAAGGCTCGTATCAGGTGAAGGGCTGGAGTCTGAAGCGGCAGCAGTTTGTGGCTTTGCTCTGGAAACGTTTACTGTACGCCCGACGCTCACGCAAAGGTTTCTTTGCTCAG
Seq A exon
ATTGTGCTTCCCGCTGTGTTCGTGTGCATCGCTCTGGTCTTCAGCCTCATCGTTCCTCCTTTCGGGAAATATCCCAGCCTCGCTCTGGAGCCCAGCATGTATGAGGAGCAGTTCACCTTTATCAG
Seq C2 exon
TAATGACGCACCAGAAGACAGACACACAAACAGGCTGCTTGATGCTCTGAAGGACAGTCCGGCTTATACTGACCAGTGCACAGATGGGAAAAACACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAGACTGACTGGTTGGA
R:
GCTGTGTTTTTCCCATCTGTGC
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]