BtaEX6035689 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96298710-96302487:-
Coord C1 exon
chr8:96302339-96302487
Coord A exon
chr8:96300358-96300482
Coord C2 exon
chr8:96298710-96298808
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCTCCTGGTTATAGATT
3' ss Score
7.67
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AATCCAGAGAAACAGACCTGCTCAGTGGGATGGATGGTAAAGGTTCCTACCAGGTGAAGGGCTGGAAGCTCACACAGCAGCAGTTTGTGGCCCTTTTGTGGAAGAGACTGCTGATTGCCAGACGGAGTCGGAAAGGATTCTTTGCTCAG
Seq A exon
ATTGTCCTGCCAGCTGTGTTTGTCTGCATCGCCCTGGTGTTCAGCTTGATTGTGCCACCCTTTGGCAAGTACCCCAGCCTGGAGCTTCAGCCCTGGATGTACAATGAACAGTACACATTTGTCAG
Seq C2 exon
TAATGATGCGCCTGAGGATGTGAGCACCCAGGAACTCTTAAACGCTCTCACCGGAAAGCCTGGCTTTGGGACCCGATGTATGGAAGGAAACCCGATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.1=12.0)
A:
PF126982=ABC2_membrane_3=FE(7.8=100)
C2:
PF126982=ABC2_membrane_3=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGAAACAGACCTGCTCA
R:
GGGATCGGGTTTCCTTCCATAC
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]