DreEX0009904 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6183377-6185549:+
Coord C1 exon
chr14:6183377-6183525
Coord A exon
chr14:6185242-6185366
Coord C2 exon
chr14:6185451-6185549
Length
125 bp
Sequences
Splice sites
3' ss Seq
CACTGTGATTGTCTTCACAGATC
3' ss Score
9.5
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
AATCCAAAGAAACTGACTATTTGAGTGGGTCAGATGGCAAAGGATCATATCAGGTGAAAGGCTGGAGTCTGAAGAGGCAGCAGTTTGTGGCTTTATTATGGAAGAGACTGCTTTACGCTCGCCGCTCTAGGAAAGGATTCTTTGCACAG
Seq A exon
ATCGTTCTTCCTGCTGTGTTTGTGTGCATCGCTCTGGTATTCAGTCTCATTGTGCCGCCATTTGGGAAATATCCCAGCCTGGCTCTTAATCCCTGGATGTATGAAGAGCAGTTCATGTTCTTCAG
Seq C2 exon
TGAAGATGCTCCTTATGACGTAAGCACACATAAGTTGCTCAGAGCTCTGTTTGATGATCCTGGCTTTGGAACACGATGCATGAAAGGAGAATCAATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAAACTGACTATTTGAGTGGG
R:
ATTGATTCTCCTTTCATGCATCGTG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]