GgaEX0022627 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54562954-54564131:-
Coord C1 exon
chrZ:54563983-54564131
Coord A exon
chrZ:54563466-54563590
Coord C2 exon
chrZ:54562954-54563052
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTTGTAATTTCAGATT
3' ss Score
9.05
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AATCCAGAGAGACTGATCTTCTCAGTGGCATGGATGGGAAAGGCTCCTACCAGATGAAGGGCTGGAAGCTCTCCCAGCAACAGTTCATGGCTCTGTTGTGGAAGAGGCTGCTTATTGCCAAGAGAAGCCGGAAGGGCTTCTTTGCTCAG
Seq A exon
ATTGTGCTGCCAGCTGTCTTTGTGTGTATTGCTCTCATGTTCAGTCTGATTGTTCCTCCCTTTGGGAAGTATCCCAGCCTGGAATTACAGCCCTGGATGTACGATGAGCAGTATACATTTATTAG
Seq C2 exon
TAATGATGCTCCAGAAGATGCAGGCACTCAGAAGCTTTTGGATGCCCTTCTCAATAAACCTGGCTTTGGAACACGCTGTATGCAGGGACACTCCATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'41-57,'41-56,42-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCTTCTCAGTGGCATGGA
R:
GGATGGAGTGTCCCTGCA
Band lengths:
235-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]