MmuEX6093489 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53065901-53068835:-
Coord C1 exon
chr4:53068687-53068835
Coord A exon
chr4:53067031-53067155
Coord C2 exon
chr4:53065901-53065999
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCCAATGCCTGTTTATAGATT
3' ss Score
6.76
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AATCCAGGGAGACCGACCTGCTCAGTGGGATGGACGGCAAAGGCTCCTACCAGCTGAAGGGCTGGAAACTCACCCAGCAACAGTTTGTGGCCCTTTTGTGGAAGAGGCTGCTGATTGCCAGACGGAGCCGGAAGGGTTTCTTTGCTCAG
Seq A exon
ATTGTCCTGCCAGCTGTCTTTGTTTGCATTGCCCTGGTCTTCAGCCTGATTGTGCCACCCTTTGGCAAGTACCCCAGCCTGGAACTTCAGCCCTGGATGTATAATGAGCAGTATACATTTGTCAG
Seq C2 exon
TAATGATGCTCCCGAGGACATGGGCACCCAGGAACTCCTGAATGCTCTGACCAAAGATCCAGGCTTTGGGACCCGCTGTATGGAAGGAAACCCAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'40-44,'40-43,41-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.206
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.1=12.0)
A:
PF126982=ABC2_membrane_3=FE(7.8=100)
C2:
PF126982=ABC2_membrane_3=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACCGACCTGCTCAG
R:
GGGATTGGGTTTCCTTCCATACA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types