MmuEX6049698 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79470069-79470706:+
Coord C1 exon
chr10:79470069-79470196
Coord A exon
chr10:79470399-79470523
Coord C2 exon
chr10:79470608-79470706
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGACAGAATTGTCCCCCAGGTT
3' ss Score
5.4
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
Seq A exon
GTTGTGTTGCCTGCCCTCTTTGTGGGCCTGGCCCTGTTCTTCAGCCTCATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAGGTCTCGTTCTTCAG
Seq C2 exon
TGAGGATGCCCCTGGGGACCCCAACCGGATGAAGCTGCTGGAGGCTCTGCTAGGGGAGGCTGGGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'28-33,'28-31,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTTGGCACCCAAC
R:
TGGCATCTTTGTCCTGCATACT
Band lengths:
221-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: