RnoEX0004919 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12749776-12750435:-
Coord C1 exon
chr7:12750284-12750435
Coord A exon
chr7:12749961-12750085
Coord C2 exon
chr7:12749776-12749874
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGACAAAGTTGTCCCACAGATC
3' ss Score
4.82
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTAAGCTGGTGCTGGACCCCCAAGCCCCAAAAGGCTCTGCACCCACCACTGCCCAAGTGCAAGGCTGGACACTCACCTGCCAACAGCTCCGGGCTTTGCTCCACAAGCGTTTTCTGCTCGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
Seq A exon
ATCGTGCTGCCCGCCCTCTTTGTGGGCCTGGCCCTGTTTTTCACCCTCATCGTGCCTCCCTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAGGTCTCCTTCTTCAG
Seq C2 exon
TGAGGATGCCCCTGCCGACCCCAACCGGATGAAGCTGCTGGAGGCTCTGCTAGGGGAGGCCGGGCTGCAGGACCCGAGCGTGCAGGGCAAAGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'35-43,'35-42,36-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTGGACCCCCAAG
R:
CTGGAACCTTTGCCCTGCAC
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]