GgaEX6027982 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2381597-2382112:-
Coord C1 exon
chr28:2381961-2382112
Coord A exon
chr28:2381765-2381889
Coord C2 exon
chr28:2381597-2381695
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCTGACCCGCGGCCCCGCAGATC
3' ss Score
8.72
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CGGAGGAGCCGCAGGAGACGGATCTGCTGCGTGGAGCGGCCGGGGGCAGCCGGTGCGTGCGGGGCTGGGCGCTCACCCGGCAGCAGCTCCGCGCTCTCTTCACCAAACGACTGCTCCATGCCCGGCGCAGCACGCGGGGCTTCTTCGCCCAG
Seq A exon
ATCGTCCTGCCCGCTGCCTTCGTCTGCCTTGCGCTGCTCTTCAGCCTCATCGTGCCGCCCGTCGGGAAGTACCCAGCGCTGCGCCTGGAGCACGGGATGTACGGGCATCAGTTCACCTTCTTCAG
Seq C2 exon
CAATGACGCTCCGGGGGACGCGGACACGTCCCGGTTGTTGGCCGCCCTCCTGGCCGAGCCGGGCTTCGGCACCGCCTGCATGAAGGACGCGGCGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGAGACGGATCTGC
R:
CCGCGTCCTTCATGCAGG
Band lengths:
235-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]