BtaEX6040217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45174145-45174828:+
Coord C1 exon
chr7:45174145-45174299
Coord A exon
chr7:45174519-45174643
Coord C2 exon
chr7:45174730-45174828
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGATGGGCTGGCCCTTCAGATT
3' ss Score
5.97
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTGGCTCTGCCCCTGAGACACAGGCACTACAGGGCTCTGGGCCGACCACCGCAGGCCTCGTACACAGCTGGGCGCTCACCTACCAGCAACTCCGGGCCTTACTTCTCAAGCGTTTCCTGCTTGCCCGCCGCAGCCGCCGTGGCCTGTTTGCTCAG
Seq A exon
ATTGTGCTACCTGCCCTCTTTGTGGGCCTGGCGCTGGTGTTCAGCCTCATTGCACCCCCATTTGGATACTACCCAGCTCTGCAGCTGAGCCCCAGCATGTATGGCTCCCAGGTGTCCTTCTTCAG
Seq C2 exon
TGATGACACTCCAGGGGACCCTGAACATGCCCGCCTGCTCGAGGCCCTGCTGGAGGAGGCTGGACTGGAGGAGCCTTACCTGAAAAGTAACTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'28-32,'28-30,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.048 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACACAGGCACTACAGG
R:
CTGCTGGAGTTACTTTTCAGGT
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]