MmuEX6049703 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80004381-80005093:+
Coord C1 exon
chr10:80004381-80004552
Coord A exon
chr10:80004719-80004850
Coord C2 exon
chr10:80004954-80005093
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCAGACCCCCAAACCCACAGGTC
3' ss Score
5.59
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTCTGGTGGAAGAGCCACCCCTTGGCCTGGTTCCTGGTGTCTCCATTCGAGGCCTGAAGAAACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACGAAGGCCACATCACTGCCTTTTTGGGTCACAACGGGGCTGGCAAGACAACCACACT
Seq A exon
GTCCATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTACAATGTGCTGTTTGATAT
Seq C2 exon
GCTGACAGTGGAAGAACATGTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAGCGGGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACAGACACGCCACCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'32-42,'32-35,35-42=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTGTCTCCATTCGAGG
R:
TAAGCCCCACATCCCGTATCA
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types