GgaEX1005408 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2830057-2830704:-
Coord C1 exon
chr28:2830533-2830704
Coord A exon
chr28:2830273-2830404
Coord C2 exon
chr28:2830057-2830196
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGCCACCCCCTCCTCCCCAGGTC
3' ss Score
10.03
5' ss Seq
CACGTAGGC
5' ss Score
3.85
Exon sequences
Seq C1 exon
TGCTGGTGGAGGAGCCGCCCGCCCAGCTGCAGCCCGGAGTTTCCATCCGCAACCTGGTGAAGGTTTACCGCAGCAGCAGCCATGTGGCCATCGATGGGCTGAGCCTGGACTTCTACGAGGGGCAGATCACCTCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCACCAT
Seq A exon
GTCCATCCTGACCGGGCTGCTGCCCCCCACCTCCGGCACTGCCTACATCCTGGGCTGGGATATCTGCTCCGATATCGACAGCATCCGGAAGTCCATGGGGATGTGCCCGCAGCACAACGTGCTTTTTGACAC
Seq C2 exon
CCTGACGGTGGAGGAGCACATCTGGTTCTACGGGAGGCTGAAGGGGCTGGCGGAGGAGCAGGTGCAAGAGGAGATGGAGCAGCTGCTCCAGGACACGGGGCTGCCCCACAAGCGGCAAGAGCAGACCAGGAACCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'17-21,'17-20,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.375
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGAAGGTTTACCGCAG
R:
ACAGGTTCCTGGTCTGCTCTT
Band lengths:
257-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]