RnoEX0004915 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12752871-12753691:-
Coord C1 exon
chr7:12753520-12753691
Coord A exon
chr7:12753108-12753239
Coord C2 exon
chr7:12752871-12753010
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCAGATCCCTGAACCCACAGGTC
3' ss Score
7.11
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTCTGGTGGAAGAGCCACCACCTGGTCTGGTTCCTGGTGTCTCCATTCGAGGCCTGAAGAAGCATTTTCGTGGCTCTCCACAGCCAGCCCTGCGAGGGCTCAACCTTGACTTCTATGAAGGCCACATCACTGCCTTTTTGGGTCACAACGGGGCTGGCAAGACAACCACACT
Seq A exon
GTCCATCTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGACGTGCAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCACAGTACAATGTGCTGTTTGACAT
Seq C2 exon
GCTGACGGTGGAAGAACACGTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATAGACTCCGAGCAGGAACATTTGATTCGGGATGTGGGGCTCATCCCTAAGCGGGACACACAGACGCGTCACCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'24-27,'24-23,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTGTCTCCATTCGAGG
R:
GCCCCACATCCCGAATCAAAT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]