DreEX6090531 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5675536-5677775:+
Coord C1 exon
chr11:5675536-5675707
Coord A exon
chr11:5675813-5675944
Coord C2 exon
chr11:5677636-5677775
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTATGATTTGACTCACAGGTC
3' ss Score
7.85
5' ss Seq
CATGTAGGG
5' ss Score
2.16
Exon sequences
Seq C1 exon
CCCGGATTGAAGCTGAGCCAACAAATCTCATTCTGGGAGTTTCTATAAGAAACTTAGTCAAGATTTATAAAAAGGGGGCCAAGCTTGCTGTTAATCATCTTAACATAAAGTTCTACGAGGGCCAAATAACATCTTTTCTGGGTCACAATGGAGCTGGCAAGACAACCACAAT
Seq A exon
GTCCATTCTAACAGGATTGTTTCCTCCTACCGCTGGTACCATATACGTGAAGGGAATGGACATTCGCTCAGATATGGACATCATCCGCAGGACTCTGGGTGTTTGTCCCCAGCACAATGTCCTCTTTGACAT
Seq C2 exon
TCTTACAGTGGAGGAGCATGTGTGGTTTTATGGTCGAATGAAGGGCATGAGCTTGGAGGAGGTGAACAAAGAGATGAATTCCCTTCTGGAGGATGTGGGCTTGCAACATAAACGATTTGAGCAGACCAAAAACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTGAAGCTGAGCCAACA
R:
TCTTTGTTCACCTCCTCCAAGC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]