RnoEX0004737 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69897816-69900697:-
Coord C1 exon
chr5:69900526-69900697
Coord A exon
chr5:69899490-69899621
Coord C2 exon
chr5:69897816-69897958
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTGTTACTCTTGTCCTCAGGTC
3' ss Score
10.9
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TCTGCATGGAAGAGGAGCCCACTCACCTGAAGCTGGGGGTATCCATTCAGAACCTGGTGAAGGTTTACCGAGATGGCATGAAGGTTGCTGTGGATGGTTTGGCGCTAAATTTTTACGAGGGCCAGATCACCTCCTTCCTGGGCCACAATGGAGCAGGGAAGACCACCACCAT
Seq A exon
GTCAATACTGACTGGGTTGTTTCCCCCAACTTCTGGCACTGCCTACATCCTGGGGAAGGACATTCGATCTGAGATGAACTCTATCCGGCAGAACCTGGGAGTCTGTCCCCAGCATAATGTGTTGTTTGACAT
Seq C2 exon
GCTGACAGTCGAAGAGCACATCTGGTTCTATGCCCGCCTAAAGGGGCTCTCAGAGAAGCATGTGAAAGCAGAGATGGAGCAGATGGCCCTGGATGTTGGCTTACCCCCCAGCAAGCTGAAAAGCAAAACAAGTCAGCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'27-27,'27-26,28-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.5=46.6)
A:
PF0000522=ABC_tran=FE(30.1=100)
C2:
PF0000522=ABC_tran=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGAAGCTGGGGGTATC
R:
CCAACATCCAGGGCCATCTG
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]